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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
23/02/2021 |
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Actualizado : |
23/02/2021 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
QUEZADA, M.; AMADEU, R. R.; VIGNALE, B.; CABRERA, D.; PRITSCH, C.; GARCIA, A. A. F. |
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Afiliación : |
MARIANELLA FERNANDA QUEZADA MACCHIAVELLO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay.; RODRIGO RAMPAZO AMADEU, Laboratório de Genética Estatística, Departamento de Genética, Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo, Piracicaba, Brazil; BEATRIZ VIGNALE, Mejoramiento Genético, Departamento de Producción Vegetal, Estación Experimental de la Facultad de Agronomía, Universidad de la República, Salto, Uruguay; CARLOS DANILO CABRERA BOLOGNA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; CLARA PRITSCH, Laboratorio de Biotecnología, Departamento de Biología Vegetal, Facultad de Agronomía, Universidad de la República, Montevideo, Uruguay; ANTONIO AUGUSTO FRANCO GARCIA, Laboratório de Genética Estatística, Departamento de Genética, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, Brazil. |
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Título : |
Construction of a high-density genetic map of Acca sellowiana (Berg.) Burret, an outcrossing species, based on two connected mapping populations. |
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Complemento del título : |
Original Research Article. |
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Fecha de publicación : |
2021 |
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Fuente / Imprenta : |
Frontiers in Plant Science, 23 February 2021, Volume 12, Article number 626811. OPEN ACCESS. Doi: https://doi.org/10.3389/fpls.2021.626811 |
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DOI : |
10.3389/fpls.2021.626811 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received: 06 November 2020; Accepted: 12 January 2021; Published: 23 February 2021.
Edited by: Maria Luisa Badenes, Instituto Valenciano de Investigaciones Agrarias, Spain.
Reviewed by: Shouvik Das, Indian Agricultural Research Institute (ICAR), India; Jonathan Elias Maldonado, Pontificia Universidad Católica de Chile, Chile.
Correspondence: Antonio Augusto Franco Garcia - augusto.garcia@usp.br
Specialty section: This article was submitted to Plant Breeding, a section of the journal Frontiers in Plant Science.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY).
This article is part of the research topic: Breeding Innovations in Underutilized Temperate Fruit Trees:
https://www.frontiersin.org/research-topics/14915/breeding-innovations-in-underutilized-temperate-fruit-trees#articles |
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Contenido : |
ABSTRACT.
Acca sellowiana, known as feijoa or pineapple guava, is a diploid, (2n = 2x = 22) outcrossing fruit tree species native to Uruguay and Brazil. The species stands out for
its highly aromatic fruits, with nutraceutical and therapeutic value. Despite its promising agronomical value, genetic studies on this species are limited. Linkage genetic maps are valuable tools for genetic and genomic studies, and constitute essential tools in breeding programs to support the development of molecular breeding strategies. A high-density composite genetic linkage map of A. sellowiana was constructed using two genetically connected populations: H5 (TCO × BR, N = 160) and H6 (TCO × DP, N = 184). Genotyping by sequencing (GBS) approach was successfully applied for developing single nucleotide polymorphism (SNP) markers. A total of 4,921 SNP markers were identified using the reference genome of the closely related species Eucalyptus grandis, whereas other 4,656 SNPs were discovered using a de novo pipeline. The individual H5 and H6 maps comprised 1,236 and 1,302 markers distributed over the expected 11 linkage groups, respectively. These two maps spanned a map length of 1,593 and 1,572 cM, with an average inter-marker distance of 1.29 and 1.21 cM, respectively. A large proportion of markers were common to both maps and showed a high degree of collinearity. The composite map consisted of 1,897 SNPs markers with a total map length of 1,314 cM and an average inter-marker distance of 0.69. A novel approach for the construction of composite maps where the meiosis information of individuals of two connected populations is captured in a single estimator is described. A high-density, accurate composite map based on a consensus ordering of markers provides a valuable contribution for future genetic research and breeding efforts in A. sellowiana. A novel mapping approach based on an estimation of multipopulation recombination fraction described here may be applied in the construction of dense composite genetic maps for any other outcrossing diploid species.
© 2021 Quezada, Amadeu, Vignale, Cabrera, Pritsch and Garcia. MenosABSTRACT.
Acca sellowiana, known as feijoa or pineapple guava, is a diploid, (2n = 2x = 22) outcrossing fruit tree species native to Uruguay and Brazil. The species stands out for
its highly aromatic fruits, with nutraceutical and therapeutic value. Despite its promising agronomical value, genetic studies on this species are limited. Linkage genetic maps are valuable tools for genetic and genomic studies, and constitute essential tools in breeding programs to support the development of molecular breeding strategies. A high-density composite genetic linkage map of A. sellowiana was constructed using two genetically connected populations: H5 (TCO × BR, N = 160) and H6 (TCO × DP, N = 184). Genotyping by sequencing (GBS) approach was successfully applied for developing single nucleotide polymorphism (SNP) markers. A total of 4,921 SNP markers were identified using the reference genome of the closely related species Eucalyptus grandis, whereas other 4,656 SNPs were discovered using a de novo pipeline. The individual H5 and H6 maps comprised 1,236 and 1,302 markers distributed over the expected 11 linkage groups, respectively. These two maps spanned a map length of 1,593 and 1,572 cM, with an average inter-marker distance of 1.29 and 1.21 cM, respectively. A large proportion of markers were common to both maps and showed a high degree of collinearity. The composite map consisted of 1,897 SNPs markers with a total map length of 1,314 cM and an average inter-marker distance of 0.69.... Presentar Todo |
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Palabras claves : |
Composite genetic map; Genotyping by sequencing; Multiparent family; Pineapple guava. |
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Thesagro : |
ACCA SELLOWIANA; FEIJOA; MYRTACEAE. |
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Asunto categoría : |
F30 Genética vegetal y fitomejoramiento |
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URL : |
https://www.frontiersin.org/articles/10.3389/fpls.2021.626811/full
https://www.frontiersin.org/articles/10.3389/fpls.2021.626811/pdf
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Marc : |
LEADER 03974naa a2200289 a 4500
001 1061756
005 2021-02-23
008 2021 bl uuuu u00u1 u #d
024 7 $a10.3389/fpls.2021.626811$2DOI
100 1 $aQUEZADA, M.
245 $aConstruction of a high-density genetic map of Acca sellowiana (Berg.) Burret, an outcrossing species, based on two connected mapping populations.$h[electronic resource]
260 $c2021
500 $aArticle history: Received: 06 November 2020; Accepted: 12 January 2021; Published: 23 February 2021. Edited by: Maria Luisa Badenes, Instituto Valenciano de Investigaciones Agrarias, Spain. Reviewed by: Shouvik Das, Indian Agricultural Research Institute (ICAR), India; Jonathan Elias Maldonado, Pontificia Universidad Católica de Chile, Chile. Correspondence: Antonio Augusto Franco Garcia - augusto.garcia@usp.br Specialty section: This article was submitted to Plant Breeding, a section of the journal Frontiers in Plant Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). This article is part of the research topic: Breeding Innovations in Underutilized Temperate Fruit Trees: https://www.frontiersin.org/research-topics/14915/breeding-innovations-in-underutilized-temperate-fruit-trees#articles
520 $aABSTRACT. Acca sellowiana, known as feijoa or pineapple guava, is a diploid, (2n = 2x = 22) outcrossing fruit tree species native to Uruguay and Brazil. The species stands out for its highly aromatic fruits, with nutraceutical and therapeutic value. Despite its promising agronomical value, genetic studies on this species are limited. Linkage genetic maps are valuable tools for genetic and genomic studies, and constitute essential tools in breeding programs to support the development of molecular breeding strategies. A high-density composite genetic linkage map of A. sellowiana was constructed using two genetically connected populations: H5 (TCO × BR, N = 160) and H6 (TCO × DP, N = 184). Genotyping by sequencing (GBS) approach was successfully applied for developing single nucleotide polymorphism (SNP) markers. A total of 4,921 SNP markers were identified using the reference genome of the closely related species Eucalyptus grandis, whereas other 4,656 SNPs were discovered using a de novo pipeline. The individual H5 and H6 maps comprised 1,236 and 1,302 markers distributed over the expected 11 linkage groups, respectively. These two maps spanned a map length of 1,593 and 1,572 cM, with an average inter-marker distance of 1.29 and 1.21 cM, respectively. A large proportion of markers were common to both maps and showed a high degree of collinearity. The composite map consisted of 1,897 SNPs markers with a total map length of 1,314 cM and an average inter-marker distance of 0.69. A novel approach for the construction of composite maps where the meiosis information of individuals of two connected populations is captured in a single estimator is described. A high-density, accurate composite map based on a consensus ordering of markers provides a valuable contribution for future genetic research and breeding efforts in A. sellowiana. A novel mapping approach based on an estimation of multipopulation recombination fraction described here may be applied in the construction of dense composite genetic maps for any other outcrossing diploid species. © 2021 Quezada, Amadeu, Vignale, Cabrera, Pritsch and Garcia.
650 $aACCA SELLOWIANA
650 $aFEIJOA
650 $aMYRTACEAE
653 $aComposite genetic map
653 $aGenotyping by sequencing
653 $aMultiparent family
653 $aPineapple guava
700 1 $aAMADEU, R. R.
700 1 $aVIGNALE, B.
700 1 $aCABRERA, D.
700 1 $aPRITSCH, C.
700 1 $aGARCIA, A. A. F.
773 $tFrontiers in Plant Science, 23 February 2021, Volume 12, Article number 626811. OPEN ACCESS. Doi: https://doi.org/10.3389/fpls.2021.626811
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Registro original : |
INIA Las Brujas (LB) |
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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha actual : |
04/03/2024 |
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Actualizado : |
04/03/2024 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Nacionales |
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Circulación / Nivel : |
Nacional - -- |
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Autor : |
RIBAS, G.; GARCIA, C. |
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Afiliación : |
GABRIEL RIBAS, Instituto Nacional de Colonización (INC), Departamento de Riego, Salto, Uruguay; CLAUDIO CESAR GARCIA GALLARRETA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. |
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Título : |
Performance assessment of furrow irrigation in two different soil textures under high rainfall and field slope conditions. [Análisis del rendimiento del riego por surcos en dos texturas de suelo diferentes bajo condiciones de alta precipitación y topografía del suelo.]. [Análise do desempenho da irrigação por sulco em duas texturas diferentes de solo sob condições de alta precipitação e inclinação do solo.] |
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Complemento del título : |
Advances in Water in Agroscience. Irrigation and water management. |
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Fecha de publicación : |
2023 |
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Fuente / Imprenta : |
Agrociencia Uruguay, 2023, Vol.27(NE1), e1187. https://doi.org/10.31285/AGRO.27.1187 -- OPEN ACCESS. |
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ISSN : |
2730-5066 |
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DOI : |
10.31285/AGRO.27.1187 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received 29 April 2023; Accepted 13 September 2023; Published 06 February 2024. -- Editor: Lucía Puppo. Universidad de la República, Facultad de Agronomía, Montevideo, Uruguay. -- Correspondence: Gabriel Ribas, inggribas@gmail.com -- License: This work is licensed under a Creative Commons Attribution 4.0 International License. (https://creativecommons.org/licenses/by/4.0/ ) |
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Contenido : |
ABSTRACT.- Furrow irrigation systems have been widely evaluated around the world. However, there is no national data indicating how efficient furrow irrigation is under Uruguayan conditions. The objective of the present work was to evaluate the performance of a system of furrow irrigation in two different soils texture. Seventeen irrigation events were analyzed in sugar-cane cultivation in northern Uruguay during 2016-17 and 2017-18 irrigation seasons. The water advance and recess curves were determined; flow rate during irrigation and runoff were monitored. The maximum furrow length studied was 100 m and the average slope was 0.24%. Application efficiencies in both types of soils were observed above 75%. These field data were compared with data simulated by the WinSRFR model, where high correlations were observed in the results of water application efficiency, distribution uniformity and runoff. These first results encourage to continue working in the efficient use of water, not only thinking about a better use of the resource but also in less loss by run-off, and therefore, less possibility of contamination and lower cost of energy and labor. .-.-.-.-.-.-.-.-.-.-.-. RESUMEN.- Los sistemas de riego por surcos han sido ampliamente evaluados en todo el mundo. Sin embargo, no hay datos nacionales que indiquen cuán eficiente es el riego por surcos. El objetivo del presente trabajo fue evaluar el desempeño de un sistema de riego por surcos en dos suelos de diferente textura. Se analizaron 17 eventos de riego en cultivos de caña de azúcar en el norte de Uruguay durante las temporadas de riego 2016-17 y 2017-18. Se determinaron las curvas de avance y retroceso del agua, se monitoreó el caudal durante el riego y el escurrimiento. La longitud máxima de surco estudiada fue de 100 m y la pendiente promedio fue de 0,24%. Se observaron eficiencias de aplicación en ambos tipos de suelos superiores al 75%. Estos datos de campo fueron comparados con datos simulados por el modelo WinSRFR, donde se observaron altas correlaciones en los resultados de eficiencia de aplicación de agua, uniformidad de distribución y escorrentía. Estos primeros resultados alientan a seguir trabajando en el uso eficiente del agua, no solo pensando en un mejor aprovechamiento del recurso, sino también en menores pérdidas por escurrimiento y, por ende, menor posibilidad de contaminación y menor costo de energía y de mano de obra. .-.-.-.-.-.-.-.-.-.-.-. RESUMO.- Os sistemas de irrigação por sulcos têm sido amplamente avaliados em todo o mundo. No entanto, não há dados nacionais que indiquem quão eficiente a irrigação por sulcos é nas condições uruguaias. O objetivo do presente trabalho foi avaliar o desempenho de um sistema de irrigação por sulcos em dois solos de texturas diferentes. Foram analisados 17 eventos de irrigação em cultivos de cana-de-açúcar no norte do Uruguai durante as temporadas de irrigação de 2016-17 e 2017-18. Foram determinadas as curvas de avanço e retrocesso da água, o fluxo durante a irrigação e o escoamento. O comprimento máximo do sulco estudado foi de 100 m e a inclinação média foi de 0,24%. Foram observadas eficiências de aplicação em ambos os tipos de solos superiores a 75%. Esses dados de campo foram comparados com dados simulados pelo modelo WinSRFR, onde foram observadas altas correlações nos resultados de eficiência de aplicação de água, uniformidade de distribuição e escoamento. Esses primeiros resultados incentivam a continuar trabalhando no uso eficiente da água, não apenas pensando em um melhor aproveitamento do recurso, mas também em menores perdas por escoamento e, portanto, menor possibilidade de contaminação e menor custo de energia e mão de obra. -- @2023 Agrociencia Uruguay. MenosABSTRACT.- Furrow irrigation systems have been widely evaluated around the world. However, there is no national data indicating how efficient furrow irrigation is under Uruguayan conditions. The objective of the present work was to evaluate the performance of a system of furrow irrigation in two different soils texture. Seventeen irrigation events were analyzed in sugar-cane cultivation in northern Uruguay during 2016-17 and 2017-18 irrigation seasons. The water advance and recess curves were determined; flow rate during irrigation and runoff were monitored. The maximum furrow length studied was 100 m and the average slope was 0.24%. Application efficiencies in both types of soils were observed above 75%. These field data were compared with data simulated by the WinSRFR model, where high correlations were observed in the results of water application efficiency, distribution uniformity and runoff. These first results encourage to continue working in the efficient use of water, not only thinking about a better use of the resource but also in less loss by run-off, and therefore, less possibility of contamination and lower cost of energy and labor. .-.-.-.-.-.-.-.-.-.-.-. RESUMEN.- Los sistemas de riego por surcos han sido ampliamente evaluados en todo el mundo. Sin embargo, no hay datos nacionales que indiquen cuán eficiente es el riego por surcos. El objetivo del presente trabajo fue evaluar el desempeño de un sistema de riego por surcos en dos suelos de diferente textura. Se ... Presentar Todo |
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Palabras claves : |
Application efficiency; Avaliação da irrigação; Eficiência de aplicação; Eficiencia de aplicación; Evaluación del riego; Furrow irrigation; Gestão da irrigação; Irrigação por sulcos; Irrigation evaluation; Water management; WinSRFR. |
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Thesagro : |
MANEJO DEL RIEGO; RIEGO POR SURCOS. |
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Asunto categoría : |
P10 Recursos hídricos y su ordenación |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/17511/1/2730-5066-1187.pdf
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Marc : |
LEADER 05554naa a2200325 a 4500
001 1064487
005 2024-03-04
008 2023 bl uuuu u00u1 u #d
022 $a2730-5066
024 7 $a10.31285/AGRO.27.1187$2DOI
100 1 $aRIBAS, G.
245 $aPerformance assessment of furrow irrigation in two different soil textures under high rainfall and field slope conditions. [Análisis del rendimiento del riego por surcos en dos texturas de suelo diferentes bajo condiciones de alta precipitación y topografía del suelo.]. [Análise do desempenho da irrigação por sulco em duas texturas diferentes de solo sob condições de alta precipitação e inclinação do solo.]$h[electronic resource]
260 $c2023
500 $aArticle history: Received 29 April 2023; Accepted 13 September 2023; Published 06 February 2024. -- Editor: Lucía Puppo. Universidad de la República, Facultad de Agronomía, Montevideo, Uruguay. -- Correspondence: Gabriel Ribas, inggribas@gmail.com -- License: This work is licensed under a Creative Commons Attribution 4.0 International License. (https://creativecommons.org/licenses/by/4.0/ )
520 $aABSTRACT.- Furrow irrigation systems have been widely evaluated around the world. However, there is no national data indicating how efficient furrow irrigation is under Uruguayan conditions. The objective of the present work was to evaluate the performance of a system of furrow irrigation in two different soils texture. Seventeen irrigation events were analyzed in sugar-cane cultivation in northern Uruguay during 2016-17 and 2017-18 irrigation seasons. The water advance and recess curves were determined; flow rate during irrigation and runoff were monitored. The maximum furrow length studied was 100 m and the average slope was 0.24%. Application efficiencies in both types of soils were observed above 75%. These field data were compared with data simulated by the WinSRFR model, where high correlations were observed in the results of water application efficiency, distribution uniformity and runoff. These first results encourage to continue working in the efficient use of water, not only thinking about a better use of the resource but also in less loss by run-off, and therefore, less possibility of contamination and lower cost of energy and labor. .-.-.-.-.-.-.-.-.-.-.-. RESUMEN.- Los sistemas de riego por surcos han sido ampliamente evaluados en todo el mundo. Sin embargo, no hay datos nacionales que indiquen cuán eficiente es el riego por surcos. El objetivo del presente trabajo fue evaluar el desempeño de un sistema de riego por surcos en dos suelos de diferente textura. Se analizaron 17 eventos de riego en cultivos de caña de azúcar en el norte de Uruguay durante las temporadas de riego 2016-17 y 2017-18. Se determinaron las curvas de avance y retroceso del agua, se monitoreó el caudal durante el riego y el escurrimiento. La longitud máxima de surco estudiada fue de 100 m y la pendiente promedio fue de 0,24%. Se observaron eficiencias de aplicación en ambos tipos de suelos superiores al 75%. Estos datos de campo fueron comparados con datos simulados por el modelo WinSRFR, donde se observaron altas correlaciones en los resultados de eficiencia de aplicación de agua, uniformidad de distribución y escorrentía. Estos primeros resultados alientan a seguir trabajando en el uso eficiente del agua, no solo pensando en un mejor aprovechamiento del recurso, sino también en menores pérdidas por escurrimiento y, por ende, menor posibilidad de contaminación y menor costo de energía y de mano de obra. .-.-.-.-.-.-.-.-.-.-.-. RESUMO.- Os sistemas de irrigação por sulcos têm sido amplamente avaliados em todo o mundo. No entanto, não há dados nacionais que indiquem quão eficiente a irrigação por sulcos é nas condições uruguaias. O objetivo do presente trabalho foi avaliar o desempenho de um sistema de irrigação por sulcos em dois solos de texturas diferentes. Foram analisados 17 eventos de irrigação em cultivos de cana-de-açúcar no norte do Uruguai durante as temporadas de irrigação de 2016-17 e 2017-18. Foram determinadas as curvas de avanço e retrocesso da água, o fluxo durante a irrigação e o escoamento. O comprimento máximo do sulco estudado foi de 100 m e a inclinação média foi de 0,24%. Foram observadas eficiências de aplicação em ambos os tipos de solos superiores a 75%. Esses dados de campo foram comparados com dados simulados pelo modelo WinSRFR, onde foram observadas altas correlações nos resultados de eficiência de aplicação de água, uniformidade de distribuição e escoamento. Esses primeiros resultados incentivam a continuar trabalhando no uso eficiente da água, não apenas pensando em um melhor aproveitamento do recurso, mas também em menores perdas por escoamento e, portanto, menor possibilidade de contaminação e menor custo de energia e mão de obra. -- @2023 Agrociencia Uruguay.
650 $aMANEJO DEL RIEGO
650 $aRIEGO POR SURCOS
653 $aApplication efficiency
653 $aAvaliação da irrigação
653 $aEficiência de aplicação
653 $aEficiencia de aplicación
653 $aEvaluación del riego
653 $aFurrow irrigation
653 $aGestão da irrigação
653 $aIrrigação por sulcos
653 $aIrrigation evaluation
653 $aWater management
653 $aWinSRFR
700 1 $aGARCIA, C.
773 $tAgrociencia Uruguay, 2023, Vol.27(NE1), e1187. https://doi.org/10.31285/AGRO.27.1187 -- OPEN ACCESS.
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